Papers

2021

DNA Supercoiling Drives a Transition between Collective Modes of Gene Synthesis Chatterjee P, Goldenfeld N, and Kim S Physical Review Letters, 2021
[OpenAccess] [bioRxiv]

2020

Probing mRNA kinetics in space and time in Escherichia coli using two-color single-molecule fluorescence in situ hybridization Kim S and Vaidya KJournal of Visualized Experiments, 2020
[OpenAccess] [github]

Better together: Cooperation and antagonism between RNA polymerases during transcription in vivo Kim SBioessays, 2020
[PubMed] [OpenAccess]

2019

Long-distance cooperative and antagonistic RNA polymerase dynamics via DNA supercoiling Kim S, Beltran B, Irnov I, and Jacobs-Wagner CCell, 2019
[PubMed] [PDF] [github]

Nucleoid size scaling and intracellular organization of translation across bacteriaGray WT, Govers SK, Xiang Y, Parry BR, Campos M, Kim S, and Jacobs-Wagner CCell, 2019
[PubMed] [PDF] [github]

2018

Effects of mRNA degradation and site-specific transcriptional pausing on protein expression noise Kim S and Jacobs-Wagner CBiophysical Journal, 2018
[PubMed] [PDF] [Supp] [github]

2013

Probing allostery through DNA Kim S*, Broströmer E*, Xing D*, Jin J*, Chong S, Ge H, Wang S, Gu C, Yang L, Gao YQ, Su X-D, Sun Y, and Xie XSScience, 2013
[PubMed] [PDF] [Supp]

2010

Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA template Kim S, Schroeder CM, and Xie XSJournal of Molecular Biology, 2010
[PubMed] [PDF] [Supp]

2008

Hydrodynamic flow-stretching assay for single-molecule studies of nucleic acid–protein interactions Schroeder CM, Blainey PC, Kim S, and Xie XSSingle-Molecule Techniques: A Laboratory Manual, 2008

2007

Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA Kim S, Blainey PC, Schroeder CM, and Xie XSNature Methods, 2007
[PubMed] [PDF] [Supp]

2005

Direct observation of an intermediate state for a surface photochemical reaction initiated by hot electron transfer Lee J, Ryu S, Chang J, Kim S, and Kim SK The Journal of Physical Chemistry B, 2005
[PubMed]